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847 | @support_hooks
class DBReader(FrozenModel):
"""Allows you to read data from a table with specified database connection
and parameters, and return its content as Spark dataframe. [](/hooks/)
!!! note
DBReader can return different results depending on [strategy][]
!!! note
This class operates with only one source at a time. It does NOT support executing queries
to multiple source, like `SELECT ... JOIN`.
!!! success "Added in 0.1.0"
!!! info "Changed in 0.8.0"
Moved `onetl.core.DBReader` → `onetl.db.DBReader`
Parameters
----------
connection : [onetl.connection.BaseDBConnection][]
Class which contains DB connection properties. See [db-connections][] section
source : str
Table/collection/etc name to read data from.
If connection has schema support, you need to specify the full name of the source
including the schema, e.g. `schema.name`.
!!! info "Changed in 0.7.0"
Renamed `table` → `source`
columns : list of str, default: None
The list of columns to be read.
If RDBMS supports any kind of expressions, you can pass them too.
```python
columns = [
"mycolumn",
"another_column as alias",
"count(*) over ()",
"some(function) as alias2",
]
```
!!! note
Some sources does not have columns.
!!! note
It is recommended to pass column names explicitly to avoid selecting too many columns,
and to avoid adding unexpected columns to dataframe if source DDL is changed.
!!! warning "Deprecated since 0.10.0"
Syntax `DBReader(columns="col1, col2")` (string instead of list) is not supported,
and will be removed in v1.0.0
where : Any, default: `None`
Custom `where` for SQL query or MongoDB pipeline.
`where` syntax depends on the source. For example, SQL sources
accept `where` as a string, but MongoDB sources accept `where` as a dictionary.
```python
# SQL database connection
where = "column_1 > 2"
# MongoDB connection
where = {
"col_1": {"$gt": 1, "$lt": 100},
"col_2": {"$gt": 2},
"col_3": {"$eq": "hello"},
}
```
!!! note
Some sources does not support data filtering.
hwm : type[HWM] | None, default: `None`
HWM class to be used as [HWM](https://etl-entities.readthedocs.io/en/stable/hwm/index.html) value.
```python
hwm = DBReader.AutoDetectHWM(
name="some_unique_hwm_name",
expression="hwm_column",
)
```
HWM value will be fetched using `hwm_column` SQL query.
If you want to use some SQL expression as HWM value, you can use it as well:
```python
hwm = DBReader.AutoDetectHWM(
name="some_unique_hwm_name",
expression="cast(hwm_column_orig as date)",
)
```
!!! note
Some sources does not support passing expressions and can be used only with column/field
names which present in the source.
!!! info "Changed in 0.10.0"
Replaces deprecated `hwm_column` and `hwm_expression` attributes
hint : Any, default: `None`
Hint expression used for querying the data.
`hint` syntax depends on the source. For example, SQL sources
accept `hint` as a string, but MongoDB sources accept `hint` as a dictionary.
```python
# SQL database connection
hint = "index(myschema.mytable mycolumn)"
# MongoDB connection
hint = {
"mycolumn": 1,
}
```
!!! note
Some sources does not support hints.
df_schema : StructType, optional, default: `None`
Spark DataFrame schema, used for proper type casting of the rows.
```python
from pyspark.sql.types import (
DoubleType,
IntegerType,
StringType,
StructField,
StructType,
TimestampType,
)
df_schema = StructType(
[
StructField("_id", IntegerType()),
StructField("text_string", StringType()),
StructField("hwm_int", IntegerType()),
StructField("hwm_datetime", TimestampType()),
StructField("float_value", DoubleType()),
],
)
reader = DBReader(
connection=connection,
source="fiddle.dummy",
df_schema=df_schema,
)
```
!!! note
Some sources does not support passing dataframe schema.
options : dict, [onetl.connection.BaseDBConnection.ReadOptions][], default: `None`
Spark read options, like partitioning mode.
```python
Postgres.ReadOptions(
partitioningMode="hash",
partitionColumn="some_column",
numPartitions=20,
fetchsize=1000,
)
```
!!! note
Some sources does not support reading options.
Examples
--------
=== "Minimal example"
```python
from onetl.db import DBReader
from onetl.connection import Postgres
postgres = Postgres(...)
# create reader
reader = DBReader(connection=postgres, source="fiddle.dummy")
# read data from table "fiddle.dummy"
df = reader.run()
```
=== "With custom reading options"
```python
from onetl.connection import Postgres
from onetl.db import DBReader
postgres = Postgres(...)
options = Postgres.ReadOptions(sessionInitStatement="select 300", fetchsize="100")
# create reader and pass some options to the underlying connection object
reader = DBReader(connection=postgres, source="fiddle.dummy", options=options)
# read data from table "fiddle.dummy"
df = reader.run()
```
=== "Full example"
```python
from onetl.db import DBReader
from onetl.connection import Postgres
postgres = Postgres(...)
options = Postgres.ReadOptions(sessionInitStatement="select 300", fetchsize="100")
# create reader with specific columns, rows filter
reader = DBReader(
connection=postgres,
source="default.test",
where="d_id > 100",
hint="NOWAIT",
columns=["d_id", "d_name", "d_age"],
options=options,
)
# read data from table "fiddle.dummy"
df = reader.run()
```
=== "Incremental reading"
See [strategy][] for more examples
```python
from onetl.strategy import IncrementalStrategy
...
reader = DBReader(
connection=postgres,
source="fiddle.dummy",
hwm=DBReader.AutoDetectHWM( # mandatory for IncrementalStrategy
name="some_unique_hwm_name",
expression="d_age",
),
)
# read data from table "fiddle.dummy"
# but only with new rows (`WHERE d_age > previous_hwm_value`)
with IncrementalStrategy():
df = reader.run()
```
"""
connection: BaseDBConnection
source: str = Field(alias=avoid_alias("table")) # type: ignore[literal-required]
columns: Optional[List[str]] = Field(default=None, min_items=1)
where: Optional[Any] = None
hint: Optional[Any] = None
df_schema: Optional[StructType] = None
hwm_column: Optional[Union[str, tuple]] = None
hwm_expression: Optional[str] = None
hwm: Optional[Union[AutoDetectHWM, ColumnHWM, KeyValueHWM]] = None
options: Optional[GenericOptions] = None
AutoDetectHWM = AutoDetectHWM
_connection_checked: bool = PrivateAttr(default=False)
@validator("source", always=True)
def validate_source(cls, value: str, values):
if "connection" not in values:
return value
connection: BaseDBConnection = values["connection"]
return connection.dialect.validate_name(value)
@validator("columns", always=True, pre=True)
def validate_columns(cls, value: str | list[str] | None, values: dict) -> list[str] | None:
if "connection" not in values:
return value # type: ignore[return-value]
connection: BaseDBConnection = values["connection"]
return connection.dialect.validate_columns(value)
@validator("where", always=True)
def validate_where(cls, value: Any, values: dict) -> Any:
if "connection" not in values:
return value # type: ignore[return-value]
connection: BaseDBConnection = values["connection"]
result = connection.dialect.validate_where(value)
if isinstance(result, dict):
return frozendict.frozendict(result) # type: ignore[attr-defined, operator]
return result
@validator("hint", always=True)
def validate_hint(cls, value: Any, values: dict) -> Any:
if "connection" not in values:
return value # type: ignore[return-value]
connection: BaseDBConnection = values["connection"]
result = connection.dialect.validate_hint(value)
if isinstance(result, dict):
return frozendict.frozendict(result) # type: ignore[attr-defined, operator]
return result
@validator("df_schema", always=True)
def validate_df_schema(cls, value: StructType | None, values: dict) -> StructType | None:
if "connection" not in values:
return value # type: ignore[return-value]
connection: BaseDBConnection = values["connection"]
return connection.dialect.validate_df_schema(value)
@root_validator(skip_on_failure=True)
def validate_hwm(cls, values: dict) -> dict:
connection: BaseDBConnection = values["connection"]
source: str = values["source"]
hwm_column: str | tuple[str, str] | None = values.get("hwm_column")
hwm_expression: str | None = values.get("hwm_expression")
hwm: HWM | None = values.get("hwm")
if hwm_column is not None:
if hwm:
msg = "Please pass either DBReader(hwm=...) or DBReader(hwm_column=...), not both"
raise ValueError(msg)
if not hwm_expression and isinstance(hwm_column, tuple):
hwm_column, hwm_expression = hwm_column
if not hwm_expression:
error_message = textwrap.dedent(
"""
When the 'hwm_column' field is a tuple, then it must be
specified as tuple('column_name', 'expression').
Otherwise, the 'hwm_column' field should be a string.
""",
)
raise ValueError(error_message)
# convert old parameters to new one
old_hwm = OldColumnHWM(
source=Table(name=source, instance=connection.instance_url), # type: ignore[arg-type]
column=Column(name=hwm_column), # type: ignore[arg-type]
)
warnings.warn(
textwrap.dedent(
f"""
Passing "hwm_column" in DBReader class is deprecated since version 0.10.0,
and will be removed in v1.0.0.
Instead use:
hwm=DBReader.AutoDetectHWM(
name={old_hwm.qualified_name!r},
expression={hwm_column!r},
)
""",
),
UserWarning,
stacklevel=2,
)
hwm = AutoDetectHWM(
name=old_hwm.qualified_name,
expression=hwm_expression or hwm_column,
)
if hwm and not hwm.expression:
msg = "`hwm.expression` cannot be None"
raise ValueError(msg)
if hwm and not hwm.entity:
hwm = hwm.copy(update={"entity": source})
if hwm and hwm.entity != source:
error_message = textwrap.dedent(
f"""
Passed `hwm.source` is different from `source`.
`hwm`:
{hwm!r}
`source`:
{source!r}
This is not allowed.
""",
)
raise ValueError(error_message)
values["hwm"] = connection.dialect.validate_hwm(hwm)
values["hwm_column"] = None
values["hwm_expression"] = None
return values
@validator("options", pre=True, always=True)
def validate_options(cls, options, values):
connection = values.get("connection")
read_options_class = getattr(connection, "ReadOptions", None)
if read_options_class:
return read_options_class.parse(options)
if options:
msg = f"{connection.__class__.__name__} does not implement ReadOptions, but {options!r} is passed"
raise ValueError(msg)
return None
@slot
def has_data(self) -> bool:
"""Returns `True` if there is some data in the source, `False` otherwise. [](/hooks/)
!!! note
This method can return different results depending on [strategy][]
!!! warning
If [hwm](https://etl-entities.readthedocs.io/en/stable/hwm/index.html) is used,
then method should be called inside [strategy][] context.
And vise-versa, if HWM is not used, this method should not be called within strategy.
!!! success "Added in 0.10.0"
Raises
------
RuntimeError
Current strategy is not compatible with HWM parameter.
Examples
--------
```python
reader = DBReader(...)
# handle situation when there is no data in the source
if reader.has_data():
df = reader.run()
else:
# implement your handling logic here
...
```
"""
entity_boundary_log(log, msg=f"{self.__class__.__name__}.has_data() starts")
self._check_strategy()
if not self._connection_checked:
self._log_parameters()
self.connection.check()
self._connection_checked = True
job_description = f"{self.connection} -> {self.__class__.__name__}.has_data({self.source})"
with override_job_description(self.connection.spark, job_description):
window, limit = self._calculate_window_and_limit()
if limit == 0:
return False
df = self.connection.read_source_as_df(
source=str(self.source),
columns=self.columns,
hint=self.hint,
where=self.where,
df_schema=self.df_schema,
window=window,
limit=1,
**self._get_read_kwargs(),
)
entity_boundary_log(log, msg=f"{self.__class__.__name__}.has_data() ends", char="-")
return bool(df.take(1))
@slot
def raise_if_no_data(self) -> None:
"""Raises exception `NoDataError` if source does not contain any data. [](/hooks/)
!!! note
This method can return different results depending on [strategy][]
!!! warning
If [hwm](https://etl-entities.readthedocs.io/en/stable/hwm/index.html) is used,
then method should be called inside [strategy][] context.
And vise-versa, if HWM is not used, this method should not be called within strategy.
!!! success "Added in 0.10.0"
Raises
------
RuntimeError
Current strategy is not compatible with HWM parameter.
[onetl.exception.NoDataError][]
There is no data in source.
Examples
--------
```python
reader = DBReader(...)
# ensure that there is some data in the source before reading it using Spark
reader.raise_if_no_data()
```
"""
if not self.has_data():
msg = f"No data in the source: {self.source}"
raise NoDataError(msg)
@slot
def run(self) -> DataFrame:
"""
Reads data from source table and saves as Spark dataframe. [](/hooks/)
!!! note
This method can return different results depending on [strategy][]
!!! warning
If [hwm](https://etl-entities.readthedocs.io/en/stable/index.html) is used,
then method should be called inside [strategy][] context.
And vise-versa, if HWM is not used, this method should not be called within strategy.
!!! success "Added in 0.1.0"
Returns
-------
df : pyspark.sql.dataframe.DataFrame
Spark dataframe
Examples
--------
Read data to Spark dataframe:
```python
df = reader.run()
```
"""
entity_boundary_log(log, msg=f"{self.__class__.__name__}.run() starts")
self._check_strategy()
if not self._connection_checked:
self._log_parameters()
self.connection.check()
self._connection_checked = True
job_description = f"{self.connection} -> {self.__class__.__name__}.run({self.source})"
with override_job_description(self.connection.spark, job_description):
window, limit = self._calculate_window_and_limit()
# update the HWM with the stop value
if self.hwm and window:
strategy: HWMStrategy = StrategyManager.get_current() # type: ignore[assignment]
strategy.update_hwm(window.stop_at.value)
df = self.connection.read_source_as_df(
source=str(self.source),
columns=self.columns,
hint=self.hint,
where=self.where,
df_schema=self.df_schema,
window=window,
limit=limit,
**self._get_read_kwargs(),
)
entity_boundary_log(log, msg=f"{self.__class__.__name__}.run() ends", char="-")
return df
def _check_strategy(self):
strategy = StrategyManager.get_current()
class_name = type(self).__name__
strategy_name = type(strategy).__name__
if self.hwm:
if not isinstance(strategy, HWMStrategy):
msg = (
f"{class_name}(hwm=...) cannot be used with {strategy_name}. "
"Check documentation DBReader.has_data(): "
"https://onetl.readthedocs.io/en/stable/db/db_reader.html#onetl.db.db_reader.db_reader.DBReader.has_data."
)
raise RuntimeError(msg)
self._prepare_hwm(strategy, self.hwm)
elif isinstance(strategy, HWMStrategy):
msg = f"{strategy_name} cannot be used without {class_name}(hwm=...)"
raise RuntimeError(msg)
def _prepare_hwm(self, strategy: HWMStrategy, hwm: ColumnHWM):
if not strategy.hwm:
# first run within the strategy
if isinstance(hwm, AutoDetectHWM):
strategy.hwm = self._autodetect_hwm(hwm)
else:
strategy.hwm = hwm
strategy.fetch_hwm()
return
if not isinstance(strategy.hwm, (ColumnHWM, KeyValueHWM)) or strategy.hwm.name != hwm.name:
# exception raised when inside one strategy >1 processes on the same table but with different hwm columns
# are executed, example: test_postgres_strategy_incremental_hwm_set_twice
error_message = textwrap.dedent(
f"""
Detected wrong {type(strategy).__name__} usage.
Previous run:
{strategy.hwm!r}
Current run:
{hwm!r}
Probably you've executed code which looks like this:
with {strategy.__class__.__name__}(...):
DBReader(hwm=one_hwm, ...).run()
DBReader(hwm=another_hwm, ...).run()
Please change it to:
with {strategy.__class__.__name__}(...):
DBReader(hwm=one_hwm, ...).run()
with {strategy.__class__.__name__}(...):
DBReader(hwm=another_hwm, ...).run()
""",
)
raise ValueError(error_message)
strategy.validate_hwm_attributes(hwm, strategy.hwm, origin=self.__class__.__name__)
def _autodetect_hwm(self, hwm: HWM) -> HWM:
field = self._get_hwm_field(hwm)
field_type = field.dataType
detected_hwm_type = self.connection.dialect.detect_hwm_class(field)
if detected_hwm_type:
log.info(
"|%s| Detected HWM type: %r",
self.__class__.__name__,
detected_hwm_type.__name__,
)
return detected_hwm_type.deserialize(hwm.dict())
error_message = textwrap.dedent(
f"""
Cannot detect HWM type for field {hwm.expression!r} of type {field_type!r}
Check that column or expression type is supported by {self.connection.__class__.__name__}.
""",
)
raise RuntimeError(error_message)
def _get_hwm_field(self, hwm: HWM) -> StructField:
log.info(
"|%s| Getting Spark type for HWM expression: %r",
self.__class__.__name__,
hwm.expression,
)
result: StructField
if self.df_schema:
schema = {field.name.casefold(): field for field in self.df_schema}
column = hwm.expression.casefold()
if column not in schema:
msg = f"HWM column {column!r} not found in dataframe schema"
raise ValueError(msg)
result = schema[column]
elif isinstance(self.connection, ContainsGetDFSchemaMethod):
df_schema = self.connection.get_df_schema(
source=self.source,
columns=[hwm.expression],
**self._get_read_kwargs(),
)
result = df_schema[0]
else:
msg = (
"You should specify `df_schema` field to use DBReader with "
f"{self.connection.__class__.__name__} connection"
)
raise ValueError(msg)
log.info("|%s| Got Spark field: %s", self.__class__.__name__, result)
return result
def _calculate_window_and_limit(self) -> tuple[Window | None, int | None]:
if not self.hwm:
# SnapshotStrategy - always select all the data from source
return None, None
strategy: HWMStrategy = StrategyManager.get_current() # type: ignore[assignment]
start_value = strategy.current.value
stop_value = strategy.stop if isinstance(strategy, BatchHWMStrategy) else None
if start_value is not None and stop_value is not None:
# we already have start and stop values, nothing to do
window = Window(self.hwm.expression, start_from=strategy.current, stop_at=strategy.next)
return window, None
if not isinstance(self.connection, ContainsGetMinMaxValues):
msg = f"{self.connection.__class__.__name__} connection does not support {strategy.__class__.__name__}"
raise TypeError(msg)
# strategy does not have start/stop/current value - use min/max values from source to fill them up
min_value, max_value = self.connection.get_min_max_values(
source=self.source,
window=Window(
self.hwm.expression,
# always include both edges, > vs >= are applied only to final dataframe
start_from=Edge(value=start_value),
stop_at=Edge(value=stop_value),
),
hint=self.hint,
where=self.where,
**self._get_read_kwargs(),
)
if min_value is None or max_value is None:
log.warning("|%s| No data in source %r", self.__class__.__name__, self.source)
# return limit=0 to always return empty dataframe from the source.
# otherwise dataframe may start returning some data whether HWM is not being set
return None, 0
# returned value type may not always be the same type as expected, force cast to HWM type
hwm = strategy.hwm.copy() # type: ignore[union-attr]
try:
min_value = hwm.set_value(min_value).value
max_value = hwm.set_value(max_value).value
except ValueError as e:
hwm_class_name = type(hwm).__name__
error_message = textwrap.dedent(
f"""
Expression {hwm.expression!r} returned values:
min: {min_value!r} of type {type(min_value).__name__!r}
max: {max_value!r} of type {type(min_value).__name__!r}
which are not compatible with {hwm_class_name}.
Please check if selected combination of HWM class and expression is valid.
""",
)
raise ValueError(error_message) from e
if isinstance(strategy, BatchHWMStrategy):
if strategy.start is None:
strategy.start = min_value
if strategy.stop is None:
strategy.stop = max_value
window = Window(self.hwm.expression, start_from=strategy.current, stop_at=strategy.next)
else:
# for IncrementalStrategy fix only max value
# to avoid difference between real dataframe content and HWM value
window = Window(
self.hwm.expression,
start_from=strategy.current,
stop_at=Edge(value=max_value),
)
return window, None
def _log_parameters(self) -> None:
log.info("|%s| -> |Spark| Reading DataFrame from source using parameters:", self.connection.__class__.__name__)
log_with_indent(log, "source = '%s'", self.source)
if self.hint:
log_json(log, self.hint, "hint")
if self.columns:
log_collection(log, "columns", self.columns)
if self.where:
log_json(log, self.where, "where")
if self.df_schema:
empty_df = self.connection.spark.createDataFrame([], self.df_schema)
log_dataframe_schema(log, empty_df)
if self.hwm:
log_hwm(log, self.hwm)
options = self.options.dict(by_alias=True, exclude_none=True) if self.options else None
log_options(log, options)
def _get_read_kwargs(self) -> dict:
if self.options:
return {"options": self.options}
return {}
@classmethod
def _forward_refs(cls) -> dict[str, type]:
try_import_pyspark()
from pyspark.sql.types import StructType
# avoid importing pyspark unless user called the constructor,
# as we allow user to use `Connection.get_packages()` for creating Spark session
refs = super()._forward_refs()
refs["StructType"] = StructType
return refs
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